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how_to
how_to:start
Table of Contents
How to
Creation/Suppression
Visualization
Save, import and export
Algorithm and other operation
How to
Creation/Suppression
create a
connection to a database
create an hEIDI Project
open a MS Identification session
to explore MSIdb content
create new contexts to organize and compile identification results
reopen an existing hEIDI Project
delete context(s)
get Sample/Run informations from ePims
Visualization
Browse all context's protein groups
visualize all context's peptides
visualize protein groups
information details
generate a graph (histograms, plots...) on peptides features
access identification general informations (parse parameters, filters, statistic, FDR)
view and edit identification informations (general information ans run/sample)
run and/or view spectral count data
New
run and/or view adjusted spectral count data
access object properties, show/hide columns in a tree view, filter columns in a tree view
Save, import and export
export identified proteins & peptides from a context
export a comparison result
save/load a comparison result
save modifications back to the MSIdb
export an SQL result to a file
populate MSI database with spectra
[AMT] generate a new AMT database from a context
[AMT] include UMCs in AMTdb
(see Import UMCs into MSIdb)
[PRIDE] export context to PRIDE XML format
[PRIDE] view PRIDE log
[Ad-hoc export] on-demand exports
[Ad-hoc export] export Protein Groups, Peptides and Leaves
[Ad-hoc export, N15] export 15N data
[AMT] Import UMCs into MSIdb
Algorithm and other operation
group proteins within a context
filter proteins or protein groups
reset protein/protein group filter
compare several contexts
compare a context with an external accession list
run and/or view spectral count data
check that all identifications have been filtered with the same parameters
write SQL Queries to explore database
change typical protein
[AMT] align retention time
[AMT] recompute retention time
make batch processing
Compute False Positive Rate
how_to/start.txt
· Last modified: 2013/01/28 08:09 by
132.168.72.131
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