Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 10 lcl|NC_020857.1_cdsid_YP_007675339.1 HHsearch (proba=100.00%)
Portal 19 lcl|NC_020857.1_cdsid_YP_007675348.1 HHsearch (proba=100.00%)
TermL 20 lcl|NC_020857.1_cdsid_YP_007675349.1 Blast (e-value=7e-52)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 8 lcl|NC_020857.1_cdsid_YP_007675337.1 HHsearch (proba=100.00%)
Hc1 6 lcl|NC_020857.1_cdsid_YP_007675335.1 HHsearch (proba=100.00%)
Ne1 5 lcl|NC_020857.1_cdsid_YP_007675334.1 HHsearch (proba=98.43%)
Tc1 4 lcl|NC_020857.1_cdsid_YP_007675333.1 HHsearch (proba=99.95%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:5974
protein:vir:102944
protein:vir:1583
SPP1
EJ-1
phig1e
34 %
31 %
25 %
Portal protein:vir:97265
protein:vir:95149
protein:vir:95014
M6
PA73
KS7
30 %
21 %
21 %
TermL protein:vir:78394
protein:vir:94991
protein:vir:102238
SETP3
KS7
PBI1
31 %
31 %
19 %
Ad1 protein:vir:94955
protein:vir:78383
protein:vir:95176
Xp15
SETP3
PA73
26 %
23 %
23 %
Hc1 protein:vir:97237
protein:vir:80382
protein:vir:79639
M6
BcepGomr
TLS
24 %
18 %
19 %
Ne1 protein:vir:103280
protein:vir:102338
protein:vir:104347
JK06
phi CD119
RTP
29 %
31 %
24 %
Tc1 protein:vir:104348
protein:vir:94921
protein:vir:97211
RTP
Xp15
M6
21 %
20 %
20 %