Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 25 lcl|Aclame:protein:vir:103285|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 33 lcl|Aclame:protein:vir:103219|NCBI_annot:hypothetical HHsearch (proba=100.00%)
TermL 36 lcl|Aclame:protein:vir:103223|NCBI_annot:putative Blast (e-value=8e-98)
MTP 17 lcl|Aclame:protein:vir:103277|NCBI_annot:hypothetical Blast (e-value=1e-127)
Sheath NOT FOUND
Ad1 23 lcl|Aclame:protein:vir:103283|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 21 lcl|Aclame:protein:vir:103282|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 19 lcl|Aclame:protein:vir:103280|NCBI_annot:phage-related HHsearch (proba=100.00%)
Tc1 18 lcl|Aclame:protein:vir:103278|NCBI_annot:phage-related HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc1<->Ad1 5 4
Ne1<->Ad1 4 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103285
protein:vir:104342
protein:vir:79642
JK06
RTP
TLS
100 %
73 %
52 %
Portal protein:vir:103219
protein:vir:104338
protein:vir:107662
JK06
RTP
T1
100 %
75 %
62 %
TermL protein:vir:103223
protein:vir:104336
protein:vir:79648
JK06
RTP
TLS
100 %
77 %
48 %
MTP protein:vir:103277
protein:vir:104349
protein:vir:79636
JK06
RTP
TLS
100 %
63 %
55 %
Ad1 protein:vir:103283
protein:vir:104344
protein:vir:107702
JK06
RTP
T1
100 %
46 %
40 %
Hc1 protein:vir:103282
protein:vir:104346
protein:vir:79639
JK06
RTP
TLS
100 %
41 %
36 %
Ne1 protein:vir:103280
protein:vir:104347
protein:vir:79638
JK06
RTP
TLS
100 %
59 %
41 %
Tc1 protein:vir:103278
protein:vir:104348
protein:vir:79637
JK06
RTP
TLS
100 %
66 %
51 %