Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 23 lcl|Aclame:protein:vir:5974|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 10 lcl|Aclame:protein:vir:5961|NCBI_annot:hypothetical HHsearch (proba=100.00%)
TermL 3 lcl|Aclame:protein:vir:5954|NCBI_annot:hypothetical Blast (e-value=0)
MTP 30 lcl|Aclame:protein:vir:5980|NCBI_annot:hypothetical Blast (e-value=1e-101)
Sheath NOT FOUND
Ad1 25 lcl|Aclame:protein:vir:5976|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 26 lcl|Aclame:protein:vir:5977|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 27 lcl|Aclame:protein:vir:5978|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 28 lcl|Aclame:protein:vir:5979|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:5974
protein:vir:102944
protein:vir:94989
SPP1
EJ-1
KS7
100 %
41 %
34 %
Portal protein:vir:5961
protein:vir:79043
protein:vir:97336
SPP1
phiC2
52A
100 %
36 %
34 %
TermL protein:vir:5954
protein:vir:9870
protein:vir:105297
SPP1
315.5
PH15
100 %
62 %
60 %
MTP protein:vir:5980
protein:vir:94505
protein:vir:9932
SPP1
phiJL-1
315.6
100 %
39 %
35 %
Ad1 protein:vir:5976
protein:vir:97430
protein:vir:95071
SPP1
92
X2
100 %
37 %
37 %
Hc1 protein:vir:5977
protein:vir:1890
protein:vir:96294
SPP1
HK022
ROSA
100 %
27 %
27 %
Ne1 protein:vir:5978
protein:vir:97327
protein:vir:1243
SPP1
52A
phi ETA
100 %
43 %
43 %
Tc1 protein:vir:5979
protein:vir:105337
protein:vir:97421
SPP1
PH15
92
100 %
30 %
30 %