Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 33 lcl|Aclame:protein:vir:9875|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 29 lcl|Aclame:protein:vir:9871|NCBI_annot:hypothetical HHsearch (proba=100.00%)
TermL 28 lcl|Aclame:protein:vir:9870|NCBI_annot:putative Blast (e-value=1e-163)
MTP 39 lcl|Aclame:protein:vir:9881|NCBI_annot:hypothetical Blast (e-value=2e-96)
Sheath NOT FOUND
Ad1 35 lcl|Aclame:protein:vir:9877|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 36 lcl|Aclame:protein:vir:9878|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 37 lcl|Aclame:protein:vir:9879|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 38 lcl|Aclame:protein:vir:9880|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:9875
protein:vir:106647
protein:vir:9927
315.5
187
315.6
97 %
37 %
34 %
Portal protein:vir:9871
protein:vir:3964
protein:vir:733
315.5
ul36
Tuc2009
100 %
44 %
44 %
TermL protein:vir:9870
protein:vir:96840
protein:vir:96147
315.5
EW
37
100 %
75 %
75 %
MTP protein:vir:9881
protein:vir:101621
protein:vir:3973
315.5
11b
ul36
100 %
25 %
21 %
Ad1 protein:vir:9877
protein:vir:95774
protein:vir:3615
315.5
SMP
TP901-1
100 %
26 %
26 %
Hc1 protein:vir:9878
protein:vir:81177
protein:vir:4459
315.5
Geobacillus virus E2
ST64B
100 %
13 %
13 %
Ne1 protein:vir:9879
protein:vir:98409
protein:vir:743
315.5
ul36
Tuc2009
90 %
26 %
25 %
Tc1 protein:vir:9880
protein:vir:5979
protein:vir:2741
315.5
SPP1
O1205
100 %
20 %
18 %