Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi ETA | Genbank acc : NC_003288 | Aclame index mge :25

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	44	lcl\|Aclame:protein:vir:1239\|NCBI_annot:similar	HHsearch (proba=100.00%)
Portal	41	lcl\|Aclame:protein:vir:1236\|NCBI_annot:similar	HHsearch (proba=100.00%)
TermL	40	lcl\|Aclame:protein:vir:1235\|NCBI_annot:similar	Blast (e-value=0)
MTP	50	lcl\|Aclame:protein:vir:1245\|NCBI_annot:similar	Blast (e-value=1e-107)
Sheath	NOT FOUND
Ad1	46	lcl\|Aclame:protein:vir:1241\|NCBI_annot:similar	HHsearch (proba=100.00%)
Hc1	47	lcl\|Aclame:protein:vir:1242\|NCBI_annot:similar	HHsearch (proba=100.00%)
Ne1	48	lcl\|Aclame:protein:vir:1243\|NCBI_annot:similar	HHsearch (proba=100.00%)
Tc1	49	lcl\|Aclame:protein:vir:1244\|NCBI_annot:similar	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1239 protein:vir:97433 protein:vir:94494	phi ETA 92 88	100 % 99 % 99 %
Portal	protein:vir:1236 protein:vir:93747 protein:vir:97336	phi ETA 55 52A	100 % 100 % 99 %
TermL	protein:vir:1235 protein:vir:93748 protein:vir:94806	phi ETA 55 29	100 % 100 % 100 %
MTP	protein:vir:97420 protein:vir:97324 protein:vir:95960	92 52A 71	100 % 100 % 100 %
Ad1	protein:vir:1241 protein:vir:97430 protein:vir:95071	phi ETA 92 X2	100 % 98 % 98 %
Hc1	protein:vir:1242 protein:vir:95069 protein:vir:97429	phi ETA X2 92	100 % 99 % 98 %
Ne1	protein:vir:97327 protein:vir:95894 protein:vir:1243	52A 71 phi ETA	100 % 100 % 100 %
Tc1	protein:vir:1244 protein:vir:97421 protein:vir:95961	phi ETA 92 71	100 % 99 % 99 %