Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 55 | Genbank acc : NC_007060 | Aclame index mge :1475

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:93742\|NCBI_annot:ORF013\|genbank:acc:YP_240459;genbank:gi:66396126;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:93747\|NCBI_annot:ORF006\|genbank:acc:YP_240454;genbank:gi:66396119;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:93748\|NCBI_annot:ORF009\|genbank:acc:YP_240453;genbank:gi:66396122;genbank:Gen	Blast (e-value=0)
MTP	15	lcl\|Aclame:protein:vir:93735\|NCBI_annot:ORF022\|genbank:acc:YP_240466;genbank:gi:66396135;genbank:Gen	Blast (e-value=1e-107)
Sheath	NOT FOUND
Ad1	10	lcl\|Aclame:protein:vir:93740\|NCBI_annot:ORF047\|genbank:acc:YP_240461;genbank:gi:66396159;genbank:Gen	HHsearch (proba=100.00%)
Hc1	11	lcl\|Aclame:protein:vir:93739\|NCBI_annot:ORF043\|genbank:acc:YP_240462;genbank:gi:66396155;genbank:Gen	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:93738\|NCBI_annot:ORF041\|genbank:acc:YP_240463;genbank:gi:66396153;genbank:Gen	HHsearch (proba=100.00%)
Tc1	14	lcl\|Aclame:protein:vir:93736\|NCBI_annot:ORF030\|genbank:acc:YP_240465;genbank:gi:66396143;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93742 protein:vir:97433 protein:vir:94494	55 92 88	100 % 99 % 99 %
Portal	protein:vir:93747 protein:vir:1236 protein:vir:97336	55 phi ETA 52A	100 % 100 % 99 %
TermL	protein:vir:93748 protein:vir:1235 protein:vir:94806	55 phi ETA 29	100 % 100 % 100 %
MTP	protein:vir:97420 protein:vir:97324 protein:vir:95960	92 52A 71	100 % 100 % 100 %
Ad1	protein:vir:93740 protein:vir:97430 protein:vir:96281	55 92 ROSA	100 % 98 % 98 %
Hc1	protein:vir:97429 protein:vir:94491 protein:vir:93739	92 88 55	100 % 100 % 100 %
Ne1	protein:vir:97427 protein:vir:94490 protein:vir:93738	92 88 55	100 % 100 % 100 %
Tc1	protein:vir:97421 protein:vir:94488 protein:vir:93736	92 88 55	100 % 100 % 100 %