Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|Aclame:protein:vir:94494|NCBI_annot:ORF015|genbank:acc:YP_240676;genbank:gi:66396348;genbank:Gen HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:94498|NCBI_annot:ORF007|genbank:acc:YP_240672;genbank:gi:66396340;genbank:Gen HHsearch (proba=100.00%)
TermL 3 lcl|Aclame:protein:vir:94499|NCBI_annot:ORF008|genbank:acc:YP_240671;genbank:gi:66396341;genbank:Gen Blast (e-value=0)
MTP 15 lcl|Aclame:protein:vir:94487|NCBI_annot:ORF026|genbank:acc:YP_240683;genbank:gi:66396358;genbank:Gen Blast (e-value=1e-107)
Sheath NOT FOUND
Ad1 10 lcl|Aclame:protein:vir:94492|NCBI_annot:ORF049|genbank:acc:YP_240678;genbank:gi:66396380;genbank:Gen HHsearch (proba=100.00%)
Hc1 11 lcl|Aclame:protein:vir:94491|NCBI_annot:ORF046|genbank:acc:YP_240679;genbank:gi:66396377;genbank:Gen HHsearch (proba=100.00%)
Ne1 12 lcl|Aclame:protein:vir:94490|NCBI_annot:ORF043|genbank:acc:YP_240680;genbank:gi:66396374;genbank:Gen HHsearch (proba=100.00%)
Tc1 14 lcl|Aclame:protein:vir:94488|NCBI_annot:ORF032|genbank:acc:YP_240682;genbank:gi:66396364;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:97433
protein:vir:94494
protein:vir:93742
92
88
55
100 %
100 %
99 %
Portal protein:vir:97447
protein:vir:94498
protein:vir:95113
92
88
X2
100 %
100 %
97 %
TermL protein:vir:97448
protein:vir:94499
protein:vir:95058
92
88
X2
100 %
100 %
98 %
MTP protein:vir:97420
protein:vir:97324
protein:vir:95960
92
52A
71
100 %
100 %
100 %
Ad1 protein:vir:97430
protein:vir:94492
protein:vir:95071
92
88
X2
100 %
100 %
98 %
Hc1 protein:vir:97429
protein:vir:94491
protein:vir:93739
92
88
55
100 %
100 %
100 %
Ne1 protein:vir:97427
protein:vir:94490
protein:vir:93738
92
88
55
100 %
100 %
100 %
Tc1 protein:vir:97421
protein:vir:94488
protein:vir:93736
92
88
55
100 %
100 %
100 %