Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phig1e | Genbank acc : NC_004305 | Aclame index mge :32

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	26	lcl\|Aclame:protein:vir:1583\|NCBI_annot:minor	HHsearch (proba=100.00%)
Portal	30	lcl\|Aclame:protein:vir:1587\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	31	lcl\|Aclame:protein:vir:1588\|NCBI_annot:putative	Blast (e-value=0)
MTP	22	lcl\|Aclame:protein:vir:1579\|NCBI_annot:minor	Blast (e-value=1e-101)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	25	lcl\|Aclame:protein:vir:1582\|NCBI_annot:minor	HHsearch (proba=100.00%)
Ne1	24	lcl\|Aclame:protein:vir:1581\|NCBI_annot:minor	HHsearch (proba=100.00%)
Tc1	23	lcl\|Aclame:protein:vir:1580\|NCBI_annot:minor	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1583 protein:vir:5974 protein:vir:102944	phig1e SPP1 EJ-1	100 % 30 % 27 %
Portal	protein:vir:1587 protein:vir:79703 protein:vir:9815	phig1e LL-H 315.4	100 % 45 % 42 %
TermL	protein:vir:1588 protein:vir:98922 protein:vir:80960	phig1e BCJA1c A500	100 % 49 % 48 %
MTP	protein:vir:1579 protein:vir:79709 protein:vir:4792	phig1e LL-H MM1	100 % 41 % 30 %
Hc1	protein:vir:1582 protein:vir:79686 protein:vir:98924	phig1e LL-H BCJA1c	100 % 44 % 32 %
Ne1	protein:vir:1581 protein:vir:98892 protein:vir:4790	phig1e BCJA1c MM1	100 % 47 % 37 %
Tc1	protein:vir:1580 protein:vir:98890 protein:vir:9824	phig1e BCJA1c 315.4	100 % 40 % 29 %