Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 59 lcl|NC_019517.1_cdsid_YP_007006230.1 HHsearch (proba=100.00%)
Portal 63 lcl|NC_019517.1_cdsid_YP_007006234.1 HHsearch (proba=100.00%)
TermL 64 lcl|NC_019517.1_cdsid_YP_007006235.1 Blast (e-value=8e-69)
MTP NOT FOUND
Sheath 53 lcl|NC_019517.1_cdsid_YP_007006224.1 HHsearch (proba=100.00%)
Ad1 57 lcl|NC_019517.1_cdsid_YP_007006228.1 HHsearch (proba=95.21%)
Hc1 55 lcl|NC_019517.1_cdsid_YP_007006226.1 HHsearch (proba=97.00%)
Ne1 56 lcl|NC_019517.1_cdsid_YP_007006227.1 HHsearch (proba=100.00%)
Tc1 54 lcl|NC_019517.1_cdsid_YP_007006225.1 HHsearch (proba=95.21%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95258
protein:vir:10324
protein:vir:4902
Felix 01
VHML
Sfi11
24 %
20 %
15 %
Portal protein:vir:95254
protein:vir:108215
protein:vir:78161
Felix 01
Giles
Min1
27 %
18 %
17 %
TermL protein:vir:95253
protein:vir:101640
protein:vir:94970
Felix 01
11b
Xp15
35 %
18 %
18 %
Sheath protein:vir:95263
protein:vir:80052
protein:vir:5260
Felix 01
B054
Aaphi23
24 %
18 %
16 %
Ad1 protein:vir:95259Felix 0120 %
Hc1 protein:vir:5258
protein:vir:95261
Aaphi23
Felix 01
18 %
21 %
Ne1 protein:vir:106728
protein:vir:78607
protein:vir:101563
Bcep1
BcepNY3
Bcep43
27 %
26 %
26 %
Tc1 protein:vir:95262
protein:vir:80105
protein:vir:94061
Felix 01
B054
OP2
19 %
17 %
13 %