Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|Aclame:protein:vir:94070|NCBI_annot:putative HHsearch (proba=100.00%)
Portal 12 lcl|Aclame:protein:vir:94049|NCBI_annot:hypothetical HHsearch (proba=100.00%)
TermL 13 lcl|Aclame:protein:vir:94056|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath 2 lcl|Aclame:protein:vir:94073|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad1 6 lcl|Aclame:protein:vir:94064|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 4 lcl|Aclame:protein:vir:94034|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 5 lcl|Aclame:protein:vir:94069|NCBI_annot:putative HHsearch (proba=100.00%)
Tc1 3 lcl|Aclame:protein:vir:94061|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:94070
protein:vir:106734
protein:vir:78558
OP2
Bcep1
BcepNY3
100 %
49 %
48 %
Portal protein:vir:94049
protein:vir:106716
protein:vir:3648
OP2
Bcep1
Bcep781
100 %
47 %
46 %
TermL protein:vir:94056
protein:vir:78588
protein:vir:106715
OP2
BcepNY3
Bcep1
100 %
57 %
57 %
Sheath protein:vir:94073
protein:vir:78611
protein:vir:101576
OP2
BcepNY3
Bcep43
100 %
49 %
49 %
Ad1 protein:vir:94064
protein:vir:101559
protein:vir:3639
OP2
Bcep43
Bcep781
100 %
37 %
37 %
Hc1 protein:vir:94034
protein:vir:78609
protein:vir:106729
OP2
BcepNY3
Bcep1
100 %
44 %
44 %
Ne1 protein:vir:94069
protein:vir:106728
protein:vir:101563
OP2
Bcep1
Bcep43
100 %
41 %
41 %
Tc1 protein:vir:94061
protein:vir:78612
protein:vir:106763
OP2
BcepNY3
Bcep1
100 %
44 %
44 %