Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 13 lcl|Aclame:protein:vir:106734|NCBI_annot:gp13|genbank:acc:NP_944321;genbank:gi:38638620;genbank:Gene HHsearch (proba=100.00%)
Portal 18 lcl|Aclame:protein:vir:106716|NCBI_annot:gp18|genbank:acc:NP_944326;genbank:gi:38638625;genbank:Gene HHsearch (proba=100.00%)
TermL 19 lcl|Aclame:protein:vir:106715|NCBI_annot:gp19|genbank:acc:NP_944327;genbank:gi:38638626;genbank:Gene Blast (e-value=0)
MTP NOT FOUND
Sheath 4 lcl|Aclame:protein:vir:106730|NCBI_annot:gp04|genbank:acc:NP_944312;genbank:gi:38638611;genbank:Gene HHsearch (proba=100.00%)
Ad1 8 lcl|Aclame:protein:vir:106739|NCBI_annot:gp08|genbank:acc:NP_944316;genbank:gi:38638615;genbank:Gene HHsearch (proba=100.00%)
Hc1 6 lcl|Aclame:protein:vir:106729|NCBI_annot:gp06|genbank:acc:NP_944314;genbank:gi:38638613;genbank:Gene HHsearch (proba=100.00%)
Ne1 7 lcl|Aclame:protein:vir:106728|NCBI_annot:gp07|genbank:acc:NP_944315;genbank:gi:38638614;genbank:Gene HHsearch (proba=100.00%)
Tc1 5 lcl|Aclame:protein:vir:106763|NCBI_annot:gp05|genbank:acc:NP_944313;genbank:gi:38638612;genbank:Gene HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106734
protein:vir:78558
protein:vir:101557
Bcep1
BcepNY3
Bcep43
100 %
99 %
97 %
Portal protein:vir:106716
protein:vir:78589
protein:vir:101541
Bcep1
BcepNY3
Bcep43
100 %
96 %
95 %
TermL protein:vir:78588
protein:vir:106715
protein:vir:101556
BcepNY3
Bcep1
Bcep43
100 %
100 %
96 %
Sheath protein:vir:106730
protein:vir:101576
protein:vir:3636
Bcep1
Bcep43
Bcep781
100 %
98 %
97 %
Ad1 protein:vir:78595
protein:vir:106739
protein:vir:101559
BcepNY3
Bcep1
Bcep43
100 %
100 %
94 %
Hc1 protein:vir:106729
protein:vir:78609
protein:vir:101560
Bcep1
BcepNY3
Bcep43
100 %
98 %
97 %
Ne1 protein:vir:106728
protein:vir:78607
protein:vir:101563
Bcep1
BcepNY3
Bcep43
100 %
99 %
97 %
Tc1 protein:vir:106763
protein:vir:78612
protein:vir:101569
Bcep1
BcepNY3
Bcep43
100 %
99 %
96 %