Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Sfi11 | Genbank acc : NC_002214 | Aclame index mge :107

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:4902\|NCBI_annot:gp348\|genbank:acc:NP_056680;genbank:gi:9635015;genbank:GeneID	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:4898\|NCBI_annot:gp502\|genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:4897\|NCBI_annot:gp411\|genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID	Blast (e-value=0)
MTP	15	lcl\|Aclame:protein:vir:4908\|NCBI_annot:gp168\|genbank:acc:NP_056686;genbank:gi:9635021;genbank:GeneID	Blast (e-value=4e-95)
Sheath	NOT FOUND
Ad1	11	lcl\|Aclame:protein:vir:4904\|NCBI_annot:gp113\|genbank:acc:NP_056682;genbank:gi:9635017;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	12	lcl\|Aclame:protein:vir:4905\|NCBI_annot:gp104\|genbank:acc:NP_056683;genbank:gi:9635018;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	13	lcl\|Aclame:protein:vir:4906\|NCBI_annot:gp114\|genbank:acc:NP_056684;genbank:gi:9635019;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	14	lcl\|Aclame:protein:vir:4907\|NCBI_annot:gp128\|genbank:acc:NP_056685;genbank:gi:9635020;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4902 protein:vir:2736 protein:vir:96490	Sfi11 O1205 2972	100 % 97 % 94 %
Portal	protein:vir:4898 protein:vir:96494 protein:vir:2732	Sfi11 2972 O1205	100 % 93 % 93 %
TermL	protein:vir:4897 protein:vir:2731 protein:vir:96495	Sfi11 O1205 2972	100 % 97 % 94 %
MTP	protein:vir:4908 protein:vir:2742 protein:vir:96484	Sfi11 O1205 2972	100 % 98 % 92 %
Ad1	protein:vir:4904 protein:vir:2738 protein:vir:96488	Sfi11 O1205 2972	100 % 85 % 84 %
Hc1	protein:vir:4905 protein:vir:2739 protein:vir:96487	Sfi11 O1205 2972	100 % 92 % 84 %
Ne1	protein:vir:4906 protein:vir:2740 protein:vir:96486	Sfi11 O1205 2972	100 % 100 % 84 %
Tc1	protein:vir:4907 protein:vir:2741 protein:vir:96485	Sfi11 O1205 2972	100 % 95 % 91 %