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hEIDI

hEIDI stands for (h) Exploitation et Intégration des Données d'Identification (Identification Data Exploitation and Integration)

Versions and download

Download is available at the following FTP site : ftp://ftp.cea.fr/pub/edyp/heidi

The last version of hEIDI, version 1.14.3, is compatible with IRMA 1.31.1 (could be download here) and MSIdb Schema version E.2 (See Full Versions bellow for more information)

This application helps user go further with identified data. It works on Mass Spectrometry Identification database (MSIdb) which compiles validated identification results and permit experts to do data mining on these results.

Main Features

Indeed, hEIDI has been developed to integrate the EDyP laboratory analysis pipeline :

  1. Samples acquisition on mass spectrometer (Raw data)
  2. Process of generated raw data into peak lists
  3. Identification of proteins using Mascot search engine
  4. Validation of the mascot identification result using IRMa
  5. Export validated data into Mass Spectrometry Identification database
  6. Exploit validated identification results by grouping identifications at the whole database level to remove redundancy or comparing multiple experiments …

Installation

Here are described the requirements and installation steps needed to use hEIDI.

  • Requierement
    • Java version 1.6 or higher must be installed or get the “..-jre.zip” distribution (which embed a JRE)
    • Postgresql server : Version 8.x or 9.x (See MSIdb page)
    • IRMa
  • Installation Step
    1. Create a MSIdb on postgresql serveur : MSIdb
    2. Unzip downloaded hEIDI file.
    3. Run <Heidi_folder>/bin/heidi.exe to launch hEIDI

Use cases

How-to

Find quick answer to your questions in the How to section.

Concepts

Read the User documentation to understand main concepts and algorithms used in hEIDI.

Full Versions

Which hEIDI/IRMa/MSIdb




26/MAR/2013 hEIDI 1.14.3 is available. (DB model compatibility : E.2)
Error creating the distribution”… Corrected version will come soon ! 15/JAN/2013 hEIDI 1.14.0 is available. (DB model compatibility : E.2)
29/FEV/2012 hEIDI 1.13.0 is available. (DB model compatibility : E.2)
05/DEC/2011 hEIDI 1.12.0 is available. (DB model compatibility : E.1)
01/AUG/2011 hEIDI 1.11.1 is available. (DB model compatibility : E.1)
22/JUL/2011 hEIDI 1.11.0 is available. (DB model compatibility : E.1)
08/MAR/2011 hEIDI 1.10.1 is available. (DB model compatibility : E.1)
01/FEB/2011 hEIDI 1.10.0 is available. (DB model compatibility : E.1)
28/OCT/2010 hEIDI 1.9.0 is available. (DB model compatibility : E.1)
12/OCT/2010 hEIDI 1.8.0 is available. (DB model compatibility : D.3 but D.4 required for Pride XML Export)
10/SEP/2010 hEIDI 1.7.0 is available. (DB model compatibility : D.3)
04/AUG/2010 hEIDI 1.6.1 is available. (DB model compatibility : D.3)
03/AUG/2010 hEIDI 1.6.0 is available. (DB model compatibility : D.3)
27/APR/2010 hEIDI 1.5.0 is available. (DB model compatibility : D.3)
29/JAN/2010 hEIDI 1.4.0 is available. (DB model compatibility : D.2)
17/SEP/2009 hEIDI 1.3.0 is available. (DB model compatibility : D.2)
22/JUN/2009 hEIDI 1.2.0 is available. (DB model compatibility : D.2)
22/APR/2009 hEIDI 1.1.0 is available. (DB model compatibility : D.2)

Release Notes

start.1469438867.txt.gz · Last modified: 2016/07/25 11:27 by 132.168.72.225