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Before exporting a given UserContext to PRIDE XML file, check if the MSI database need to be populated with spectrum details.
Since hEIDI 1.11.1, this functionality is no more available from the hEIDI GUI, but has to be executed (outside from hEIDI, see bellow) [by your system administrator].
To import spectrum detail for a specified context using Paloma
tool, you need to have the context id. This property is accessible in Context property sheet. View in accessproperties page.
java -Djava.library.path=./lib -Xms512m -Xmx1024m -classpath .\paloma-<version>.jar cea.edyp.palomae1.MainSpectrumFeeder [OPTIONS]
-u <user> -p <password> -url <dbURL> -m <root> [-d <driver>] -cid <context_id>
whereSince hEIDI 1.11.1, this functionality is no more available. Should be reintegrated …
MS Identifications→Database Update→Populate with spectra
\\cp-mascot\data
or the corresponding Drive Letter you have set up in Windows Explorer, for example Y:
.Ok, populate MSIdb with missing spectra
, else click on Do nothing & Close this window
Yes
, a message will appear when process is finished