Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PM1 | Genbank acc : NC_020883

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 86

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	62	lcl\|NC_020883.1_cdsid_YP_007678088.1	HHsearch (proba=100.00%)
Portal	56	lcl\|NC_020883.1_cdsid_YP_007678082.1	HHsearch (proba=100.00%)
TermL	51	lcl\|NC_020883.1_cdsid_YP_007678077.1	Blast (e-value=6e-46)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	64	lcl\|NC_020883.1_cdsid_YP_007678090.1	HHsearch (proba=93.11%)
Hc1	65	lcl\|NC_020883.1_cdsid_YP_007678091.1	HHsearch (proba=87.97%)
Ne1	66	lcl\|NC_020883.1_cdsid_YP_007678092.1	HHsearch (proba=100.00%)
Tc1	67	lcl\|NC_020883.1_cdsid_YP_007678093.1	HHsearch (proba=96.97%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98480 protein:vir:96490 protein:vir:4902	VWB 2972 Sfi11	25 % 20 % 20 %
Portal	protein:vir:1587 protein:vir:38 protein:vir:9815	phig1e A118 315.4	17 % 17 % 17 %
TermL	protein:vir:78831 protein:vir:103950 protein:vir:96370	80alpha phiNM 53	30 % 30 % 30 %
Ad1	protein:vir:98900 protein:vir:80967 protein:vir:43	BCJA1c A500 A118	18 % 18 % 19 %
Hc1	protein:vir:44 protein:vir:98924 protein:vir:80934	A118 BCJA1c A500	11 % 6 % 9 %
Ne1	protein:vir:94108 protein:vir:105916 protein:vir:96121	96 phiETA3 37	25 % 24 % 23 %
Tc1	protein:vir:9579 protein:vir:1643 protein:vir:94768	SM1 r1t phi LC3	11 % 9 % 9 %