Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 81 lcl|NC_015251.1_cdsid_YP_004300919.1 HHsearch (proba=100.00%)
Portal 87 lcl|NC_015251.1_cdsid_YP_004300925.1 HHsearch (proba=100.00%)
TermL 90 lcl|NC_015251.1_cdsid_YP_004300928.1 Blast (e-value=0)
MTP 88 lcl|NC_015251.1_cdsid_YP_004300926.1 Blast (e-value=4e-67)
Sheath 89 lcl|NC_015251.1_cdsid_YP_004300927.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 94 lcl|NC_015251.1_cdsid_YP_004300932.1 HHsearch (proba=100.00%)
Hc2 NOT FOUND
Tc2 93 lcl|NC_015251.1_cdsid_YP_004300931.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106286
protein:vir:103463
protein:vir:7214
Aeh1
RB32
T4
69 %
61 %
61 %
Portal protein:vir:106282
protein:vir:108049
protein:vir:103458
Aeh1
JS98
RB32
64 %
51 %
51 %
TermL protein:vir:106290
protein:vir:98262
protein:vir:108053
Aeh1
RB43
JS98
64 %
57 %
57 %
MTP protein:vir:106171
protein:vir:108048
protein:vir:98264
Aeh1
JS98
RB43
72 %
58 %
57 %
Sheath protein:vir:106427
protein:vir:103456
protein:vir:6594
Aeh1
RB32
RB49
69 %
53 %
53 %
Ad2 protein:vir:106428
protein:vir:81013
protein:vir:6589
Aeh1
Phi1
RB49
55 %
48 %
48 %
Tc2 protein:vir:106402
protein:vir:107931
protein:vir:100536
Aeh1
JS98
25
54 %
50 %
49 %