Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 158 lcl|Aclame:protein:vir:107947|NCBI_annot:gp23 HHsearch (proba=100.00%)
Portal 153 lcl|Aclame:protein:vir:108049|NCBI_annot:gp20 HHsearch (proba=100.00%)
TermL 150 lcl|Aclame:protein:vir:108053|NCBI_annot:gp17 Blast (e-value=0)
MTP 152 lcl|Aclame:protein:vir:108048|NCBI_annot:gp19 Blast (e-value=2e-96)
Sheath 151 lcl|Aclame:protein:vir:108052|NCBI_annot:gp18 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 146 lcl|Aclame:protein:vir:107900|NCBI_annot:gp13 HHsearch (proba=100.00%)
Hc2 147 lcl|Aclame:protein:vir:107937|NCBI_annot:gp14 HHsearch (proba=100.00%)
Tc2 148 lcl|Aclame:protein:vir:107931|NCBI_annot:gp15 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:107947
protein:vir:7214
protein:vir:103463
JS98
T4
RB32
100 %
85 %
84 %
Portal protein:vir:108049
protein:vir:7208
protein:vir:6896
JS98
T4
RB69
100 %
76 %
76 %
TermL protein:vir:108053
protein:vir:6893
protein:vir:103455
JS98
RB69
RB32
100 %
84 %
83 %
MTP protein:vir:108048
protein:vir:6895
protein:vir:98264
JS98
RB69
RB43
100 %
75 %
74 %
Sheath protein:vir:108052
protein:vir:103456
protein:vir:7206
JS98
RB32
T4
100 %
73 %
72 %
Ad2 protein:vir:107900
protein:vir:103451
protein:vir:7198
JS98
RB32
T4
100 %
66 %
66 %
Hc2 protein:vir:107937
protein:vir:103452
protein:vir:7199
JS98
RB32
T4
100 %
69 %
69 %
Tc2 protein:vir:107931
protein:vir:7200
protein:vir:103453
JS98
T4
RB32
100 %
59 %
58 %