Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 175 lcl|Aclame:protein:vir:7214|NCBI_annot:gp23 HHsearch (proba=100.00%)
Portal 169 lcl|Aclame:protein:vir:7208|NCBI_annot:gp20 HHsearch (proba=100.00%)
TermL 166 lcl|Aclame:protein:vir:7205|NCBI_annot:gp17'' Blast (e-value=0)
MTP 168 lcl|Aclame:protein:vir:7207|NCBI_annot:gp19 Blast (e-value=3e-95)
Sheath 167 lcl|Aclame:protein:vir:7206|NCBI_annot:gp18 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 159 lcl|Aclame:protein:vir:7198|NCBI_annot:gp13 HHsearch (proba=100.00%)
Hc2 160 lcl|Aclame:protein:vir:7199|NCBI_annot:gp14 HHsearch (proba=100.00%)
Tc2 161 lcl|Aclame:protein:vir:7200|NCBI_annot:gp15 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:7214
protein:vir:103463
protein:vir:6901
T4
RB32
RB69
100 %
98 %
94 %
Portal protein:vir:7208
protein:vir:103458
protein:vir:6896
T4
RB32
RB69
100 %
99 %
89 %
TermL protein:vir:7202
protein:vir:103455
protein:vir:6893
T4
RB32
RB69
100 %
99 %
90 %
MTP protein:vir:7207
protein:vir:103457
protein:vir:6895
T4
RB32
RB69
100 %
99 %
88 %
Sheath protein:vir:7206
protein:vir:103456
protein:vir:6894
T4
RB32
RB69
100 %
99 %
83 %
Ad2 protein:vir:7198
protein:vir:103451
protein:vir:6889
T4
RB32
RB69
100 %
98 %
84 %
Hc2 protein:vir:7199
protein:vir:103452
protein:vir:6890
T4
RB32
RB69
100 %
99 %
89 %
Tc2 protein:vir:7200
protein:vir:103453
protein:vir:6891
T4
RB32
RB69
100 %
99 %
76 %