Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 45 lcl|NC_010147.1_cdsid_YP_001604135.1 HHsearch (proba=100.00%)
Portal 42 lcl|NC_010147.1_cdsid_YP_001604132.1 HHsearch (proba=100.00%)
TermL 41 lcl|NC_010147.1_cdsid_YP_001604131.1 Blast (e-value=0)
MTP 51 lcl|NC_010147.1_cdsid_YP_001604141.1 Blast (e-value=1e-107)
Sheath NOT FOUND
Ad1 47 lcl|NC_010147.1_cdsid_YP_001604137.1 HHsearch (proba=100.00%)
Hc1 48 lcl|NC_010147.1_cdsid_YP_001604138.1 HHsearch (proba=100.00%)
Ne1 49 lcl|NC_010147.1_cdsid_YP_001604139.1 HHsearch (proba=100.00%)
Tc1 50 lcl|NC_010147.1_cdsid_YP_001604140.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:93742
protein:vir:97433
protein:vir:94494
55
92
88
100 %
99 %
99 %
Portal protein:vir:1236
protein:vir:93747
protein:vir:97336
phi ETA
55
52A
100 %
100 %
99 %
TermL protein:vir:93748
protein:vir:1235
protein:vir:94806
55
phi ETA
29
100 %
100 %
100 %
MTP protein:vir:97420
protein:vir:97324
protein:vir:95960
92
52A
71
100 %
100 %
100 %
Ad1 protein:vir:93740
protein:vir:97430
protein:vir:96281
55
92
ROSA
100 %
98 %
98 %
Hc1 protein:vir:97429
protein:vir:94491
protein:vir:93739
92
88
55
100 %
100 %
100 %
Ne1 protein:vir:97427
protein:vir:94490
protein:vir:93738
92
88
55
100 %
100 %
100 %
Tc1 protein:vir:97421
protein:vir:94488
protein:vir:93736
92
88
55
100 %
100 %
100 %