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--- userguide:pride_inspector [2012/03/14 10:42]
132.168.73.124
+++ userguide:pride_inspector [2012/03/14 12:06] (current)
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@@ Line 15: / Line 15: @@
 ===== FAQ =====
-==== Why do I not have the same number of peptides between hEIDI & Pride Inspector ? ====
+==== Why do I not get the same number of peptides between hEIDI & Pride Inspector ? ====
-Peptide unicity in an hEIDI context is based on sequence & calculated mass.
+{{:userguide:pride_peptidecountinprideinspectorandheidi.png|}}
-In Pride Inspector, a row exists for each peptide-protein match.
-For example, the peptide ''FASFIDKVR'' matches on 15 Protein Groups (15 master proteins) and 7 other proteins.\\
-In hEIDI, this peptide is represented by one peptide node in the ''Peptide View''.\\
-In Pride Inspector, this peptide appears 22 times: one row for each protein match.
-So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context.
+**Peptide unicity in an hEIDI context is based on sequence & calculated mass.**\\
+For example, the peptide ''FASFIDKVR'' is represented by one peptide node in the ''Peptide View''. \\
+This peptide matches on 15 master proteins (see the ''Protein Group(s) match(es)'' column) but 7 other proteins as well (information not visible in hEIDI)\\
+{{:userguide:pride_onepeptideinheidi.png|}}
+**In Pride Inspector, a row exists for each peptide-protein match.**\\
+For example, the peptide ''FASFIDKVR'' appears 22 times: one row for each protein match.
+{{:userguide:pride_onepeptideinprideinspector.png|}}
+So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context.
+===== The Experiment Details tab =====
 {{:userguide:prideinspector_2.png|}}

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