Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 13 lcl|NC_021342.1_cdsid_YP_008060416.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_021342.1_cdsid_YP_008060407.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_021342.1_cdsid_YP_008060405.1 Blast (e-value=1e-116)
MTP NOT FOUND
Sheath 26 lcl|NC_021342.1_cdsid_YP_008060429.1 HHsearch (proba=100.00%)
Ad1 22 lcl|NC_021342.1_cdsid_YP_008060425.1 HHsearch (proba=100.00%)
Hc1 24 lcl|NC_021342.1_cdsid_YP_008060427.1 HHsearch (proba=98.34%)
Ne1 23 lcl|NC_021342.1_cdsid_YP_008060426.1 HHsearch (proba=100.00%)
Tc1 25 lcl|NC_021342.1_cdsid_YP_008060428.1 HHsearch (proba=99.67%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104342
protein:vir:107687
protein:vir:103285
RTP
T1
JK06
22 %
21 %
20 %
Portal protein:vir:5249
protein:vir:107662
protein:vir:80040
Aaphi23
T1
B054
28 %
21 %
21 %
TermL protein:vir:96067
protein:vir:99572
protein:vir:96782
F8
BcepF1
phiHSIC
48 %
46 %
24 %
Sheath protein:vir:5260
protein:vir:95263
protein:vir:94073
Aaphi23
Felix 01
OP2
25 %
21 %
18 %
Ad1 protein:vir:5256
protein:vir:107756
protein:vir:104344
Aaphi23
BcepB1A
RTP
29 %
19 %
20 %
Hc1 protein:vir:95261
protein:vir:5258
protein:vir:101560
Felix 01
Aaphi23
Bcep43
21 %
17 %
20 %
Ne1 protein:vir:5257
protein:vir:96105
protein:vir:99546
Aaphi23
F8
BcepF1
35 %
28 %
25 %
Tc1 protein:vir:80105
protein:vir:5259
protein:vir:78612
B054
Aaphi23
BcepNY3
15 %
16 %
16 %