Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 160 lcl|NC_020879.1_cdsid_YP_007677877.1 HHsearch (proba=100.00%)
Portal 155 lcl|NC_020879.1_cdsid_YP_007677872.1 HHsearch (proba=100.00%)
TermL 152 lcl|NC_020879.1_cdsid_YP_007677869.1 Blast (e-value=0)
MTP 154 lcl|NC_020879.1_cdsid_YP_007677871.1 Blast (e-value=8e-89)
Sheath 153 lcl|NC_020879.1_cdsid_YP_007677870.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 148 lcl|NC_020879.1_cdsid_YP_007677865.1 HHsearch (proba=100.00%)
Hc2 149 lcl|NC_020879.1_cdsid_YP_007677866.1 HHsearch (proba=100.00%)
Tc2 150 lcl|NC_020879.1_cdsid_YP_007677867.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:100603
protein:vir:101039
protein:vir:101811
25
44RR2.8t
31
98 %
93 %
93 %
Portal protein:vir:100598
protein:vir:101189
protein:vir:101806
25
44RR2.8t
31
99 %
91 %
91 %
TermL protein:vir:100538
protein:vir:101186
protein:vir:101803
25
44RR2.8t
31
96 %
89 %
89 %
MTP protein:vir:100597
protein:vir:101188
protein:vir:101805
25
44RR2.8t
31
95 %
91 %
91 %
Sheath protein:vir:100539
protein:vir:101187
protein:vir:101804
25
44RR2.8t
31
98 %
87 %
87 %
Ad2 protein:vir:100534
protein:vir:101153
protein:vir:101857
25
44RR2.8t
31
99 %
84 %
84 %
Hc2 protein:vir:100535
protein:vir:101154
protein:vir:101800
25
44RR2.8t
31
97 %
81 %
81 %
Tc2 protein:vir:100536
protein:vir:101155
protein:vir:101801
25
44RR2.8t
31
99 %
81 %
81 %