Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 161 lcl|Aclame:protein:vir:101039|NCBI_annot:major HHsearch (proba=100.00%)
Portal 156 lcl|Aclame:protein:vir:101189|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 153 lcl|Aclame:protein:vir:101186|NCBI_annot:terminase Blast (e-value=0)
MTP 155 lcl|Aclame:protein:vir:101188|NCBI_annot:tail Blast (e-value=7e-95)
Sheath 154 lcl|Aclame:protein:vir:101187|NCBI_annot:tail HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 149 lcl|Aclame:protein:vir:101153|NCBI_annot:neck HHsearch (proba=100.00%)
Hc2 150 lcl|Aclame:protein:vir:101154|NCBI_annot:neck HHsearch (proba=100.00%)
Tc2 151 lcl|Aclame:protein:vir:101155|NCBI_annot:tail HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:101039
protein:vir:101811
protein:vir:100603
44RR2.8t
31
25
100 %
100 %
93 %
Portal protein:vir:101189
protein:vir:101806
protein:vir:100598
44RR2.8t
31
25
100 %
100 %
91 %
TermL protein:vir:101186
protein:vir:101803
protein:vir:100538
44RR2.8t
31
25
100 %
100 %
87 %
MTP protein:vir:101188
protein:vir:101805
protein:vir:100597
44RR2.8t
31
25
100 %
100 %
88 %
Sheath protein:vir:101187
protein:vir:101804
protein:vir:100539
44RR2.8t
31
25
100 %
100 %
86 %
Ad2 protein:vir:101153
protein:vir:101857
protein:vir:100534
44RR2.8t
31
25
100 %
100 %
84 %
Hc2 protein:vir:101154
protein:vir:101800
protein:vir:100535
44RR2.8t
31
25
100 %
100 %
82 %
Tc2 protein:vir:101155
protein:vir:101801
protein:vir:100536
44RR2.8t
31
25
100 %
100 %
80 %