Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 10 lcl|NC_020858.1_cdsid_YP_007675402.1 HHsearch (proba=100.00%)
Portal 13 lcl|NC_020858.1_cdsid_YP_007675405.1 HHsearch (proba=100.00%)
TermL 14 lcl|NC_020858.1_cdsid_YP_007675406.1 Blast (e-value=1e-62)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 6 lcl|NC_020858.1_cdsid_YP_007675398.1 HHsearch (proba=100.00%)
Hc3 4 lcl|NC_020858.1_cdsid_YP_007675396.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:8843
protein:vir:96442
protein:vir:103370
PaP3
119X
PaP2
30 %
18 %
17 %
Portal protein:vir:8846
protein:vir:95821
protein:vir:108295
PaP3
N4
BA3
25 %
15 %
14 %
TermL protein:vir:105417
protein:vir:171
protein:vir:3519
Sf6
HK620
APSE-1
27 %
27 %
23 %
Ad3 protein:vir:8841
protein:vir:3302
protein:vir:2779
PaP3
933W
Stx2 converting bacteriophage I
27 %
13 %
13 %
Hc3 protein:vir:352
protein:vir:8837
protein:vir:108312
Mx8
PaP3
BA3
26 %
13 %
17 %