Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 46 lcl|Aclame:protein:vir:174|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 44 lcl|Aclame:protein:vir:172|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 43 lcl|Aclame:protein:vir:171|NCBI_annot:terminase Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 48 lcl|Aclame:protein:vir:176|NCBI_annot:DNA HHsearch (proba=100.00%)
Hc3 49 lcl|Aclame:protein:vir:177|NCBI_annot:DNA HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:174
protein:vir:105374
protein:vir:105522
HK620
Sf6
phiSG1
100 %
99 %
80 %
Portal protein:vir:172
protein:vir:105429
protein:vir:105520
HK620
Sf6
phiSG1
100 %
99 %
81 %
TermL protein:vir:171
protein:vir:105417
protein:vir:3519
HK620
Sf6
APSE-1
100 %
99 %
39 %
Ad3 protein:vir:176
protein:vir:105380
protein:vir:3528
HK620
Sf6
APSE-1
100 %
99 %
58 %
Hc3 protein:vir:177
protein:vir:105428
protein:vir:9268
HK620
Sf6
ST64T
100 %
99 %
93 %