Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 138 lcl|NC_019919.1_cdsid_YP_007237117.1 HHsearch (proba=100.00%)
Portal 141 lcl|NC_019919.1_cdsid_YP_007237120.1 HHsearch (proba=100.00%)
TermL 142 lcl|NC_019919.1_cdsid_YP_007237121.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 137 lcl|NC_019919.1_cdsid_YP_007237116.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 135 lcl|NC_019919.1_cdsid_YP_007237114.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104256
protein:vir:81227
protein:vir:100135
T5
BFK20
phi1026b
79 %
20 %
18 %
Portal protein:vir:104259
protein:vir:1884
protein:vir:189
T5
HK022
HK97
91 %
20 %
20 %
TermL protein:vir:104262
protein:vir:106551
protein:vir:9870
T5
Lj965
315.5
90 %
23 %
22 %
Ad1 protein:vir:104255
protein:vir:1271
protein:vir:4512
T5
phi-105
V
89 %
25 %
22 %
Tc1 protein:vir:104224
protein:vir:79571
protein:vir:3428
T5
cdtI
lambda
93 %
22 %
21 %