Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 148 lcl|Aclame:protein:vir:104256|NCBI_annot:major HHsearch (proba=100.00%)
Portal 151 lcl|Aclame:protein:vir:104259|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 154 lcl|Aclame:protein:vir:104262|NCBI_annot:terminase, Blast (e-value=0)
MTP 150 lcl|Aclame:protein:vir:104258|NCBI_annot:putative Blast (e-value=2e-15)
Sheath NOT FOUND
Ad1 147 lcl|Aclame:protein:vir:104255|NCBI_annot:Hypothetical HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 145 lcl|Aclame:protein:vir:104224|NCBI_annot:Hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104256
protein:vir:485
protein:vir:101650
T5
P27
244
100 %
19 %
18 %
Portal protein:vir:104259
protein:vir:1380
protein:vir:95965
T5
phi3626
2638A
100 %
20 %
20 %
TermL protein:vir:104262
protein:vir:9870
protein:vir:102238
T5
315.5
PBI1
100 %
23 %
22 %
MTP protein:vir:196
protein:vir:93600
protein:vir:105771
HK97
phi 4795
ES18
31 %
27 %
24 %
Ad1 protein:vir:104255
protein:vir:4512
protein:vir:1271
T5
V
phi-105
100 %
22 %
22 %
Tc1 protein:vir:104224
protein:vir:3428
protein:vir:79571
T5
lambda
cdtI
100 %
23 %
21 %