Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 52 lcl|NC_019918.1_cdsid_YP_007236873.1 HHsearch (proba=100.00%)
Portal 48 lcl|NC_019918.1_cdsid_YP_007236869.1 HHsearch (proba=100.00%)
TermL 47 lcl|NC_019918.1_cdsid_YP_007236868.1 Blast (e-value=1e-83)
MTP NOT FOUND
Sheath 57 lcl|NC_019918.1_cdsid_YP_007236878.1 HHsearch (proba=100.00%)
Ad1 53 lcl|NC_019918.1_cdsid_YP_007236874.1 HHsearch (proba=100.00%)
Hc1 55 lcl|NC_019918.1_cdsid_YP_007236876.1 HHsearch (proba=100.00%)
Ne1 54 lcl|NC_019918.1_cdsid_YP_007236875.1 HHsearch (proba=100.00%)
Tc1 56 lcl|NC_019918.1_cdsid_YP_007236877.1 HHsearch (proba=97.23%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95258
protein:vir:10324
protein:vir:98480
Felix 01
VHML
VWB
29 %
27 %
15 %
Portal protein:vir:95254
protein:vir:108215
protein:vir:78161
Felix 01
Giles
Min1
39 %
22 %
19 %
TermL protein:vir:95253
protein:vir:94970
protein:vir:97250
Felix 01
Xp15
M6
40 %
20 %
19 %
Sheath protein:vir:95263
protein:vir:80052
protein:vir:5260
Felix 01
B054
Aaphi23
27 %
22 %
20 %
Ad1 protein:vir:95259Felix 0128 %
Hc1 protein:vir:95261
protein:vir:5258
protein:vir:107716
Felix 01
Aaphi23
BcepB1A
20 %
21 %
17 %
Ne1 protein:vir:5257
protein:vir:94069
protein:vir:78607
Aaphi23
OP2
BcepNY3
28 %
28 %
28 %
Tc1 protein:vir:3637
protein:vir:101569
protein:vir:78612
Bcep781
Bcep43
BcepNY3
21 %
22 %
19 %