Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|NC_019713.1_cdsid_YP_007111880.1 HHsearch (proba=100.00%)
Portal 31 lcl|NC_019713.1_cdsid_YP_007111877.1 HHsearch (proba=100.00%)
TermL 30 lcl|NC_019713.1_cdsid_YP_007111876.1 Blast (e-value=5e-25)
MTP 39 lcl|NC_019713.1_cdsid_YP_007111885.1 Blast (e-value=3e-21)
Sheath NOT FOUND
Ad1 36 lcl|NC_019713.1_cdsid_YP_007111882.1 HHsearch (proba=100.00%)
Hc1 37 lcl|NC_019713.1_cdsid_YP_007111883.1 HHsearch (proba=98.23%)
Ne1 42 lcl|NC_019713.1_cdsid_YP_007111888.1 HHsearch (proba=100.00%)
Tc1 38 lcl|NC_019713.1_cdsid_YP_007111884.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Hc1 5 2
Ne1<->Ad1 6 3
Ne1<->Tc1 4 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3613
protein:vir:739
protein:vir:80930
TP901-1
Tuc2009
A500
20 %
19 %
17 %
Portal protein:vir:94956
protein:vir:80453
protein:vir:95149
Xp15
BcepGomr
PA73
30 %
22 %
22 %
TermL protein:vir:94991
protein:vir:78394
protein:vir:102238
KS7
SETP3
PBI1
25 %
24 %
18 %
MTP protein:vir:97240
protein:vir:95133
protein:vir:80398
M6
PA73
BcepGomr
22 %
22 %
20 %
Ad1 protein:vir:97267
protein:vir:95176
protein:vir:80389
M6
PA73
BcepGomr
31 %
27 %
21 %
Hc1 protein:vir:95145
protein:vir:97237
protein:vir:80382
PA73
M6
BcepGomr
23 %
25 %
13 %
Ne1 protein:vir:103280
protein:vir:95157
protein:vir:80425
JK06
PA73
BcepGomr
24 %
23 %
23 %
Tc1 protein:vir:80429
protein:vir:97211
protein:vir:95155
BcepGomr
M6
PA73
24 %
24 %
19 %