Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 9 lcl|NC_019414.1_cdsid_YP_006990124.1 HHsearch (proba=100.00%)
Portal 6 lcl|NC_019414.1_cdsid_YP_006990121.1 HHsearch (proba=100.00%)
TermL 5 lcl|NC_019414.1_cdsid_YP_006990120.1 Blast (e-value=1e-114)
MTP 14 lcl|NC_019414.1_cdsid_YP_006990129.1 Blast (e-value=8e-21)
Sheath NOT FOUND
Ad1 10 lcl|NC_019414.1_cdsid_YP_006990125.1 HHsearch (proba=100.00%)
Hc1 11 lcl|NC_019414.1_cdsid_YP_006990126.1 HHsearch (proba=99.92%)
Ne1 12 lcl|NC_019414.1_cdsid_YP_006990127.1 HHsearch (proba=100.00%)
Tc1 13 lcl|NC_019414.1_cdsid_YP_006990128.1 HHsearch (proba=98.15%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99075
protein:vir:102605
protein:vir:105822
Wildcat
Llij
PMC
30 %
20 %
20 %
Portal protein:vir:2500
protein:vir:99072
protein:vir:78537
TM4
Wildcat
U2
32 %
24 %
21 %
TermL protein:vir:4222
protein:vir:104081
protein:vir:7767
L5
Che12
Bxz2
40 %
39 %
39 %
MTP protein:vir:104093
protein:vir:7778
protein:vir:4232
Che12
Bxz2
L5
34 %
34 %
32 %
Ad1 protein:vir:98481
protein:vir:78478
protein:vir:78254
VWB
U2
Bethlehem
26 %
25 %
25 %
Hc1 protein:vir:2346
protein:vir:78288
protein:vir:7775
Bxb1
Bethlehem
Bxz2
22 %
20 %
17 %
Ne1 protein:vir:7776
protein:vir:78503
protein:vir:78298
Bxz2
U2
Bethlehem
35 %
31 %
31 %
Tc1 protein:vir:98426
protein:vir:1643
protein:vir:99005
VWB
r1t
Wildcat
27 %
20 %
24 %