Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|Aclame:protein:vir:105822|NCBI_annot:gp6|genbank:acc:YP_655767;genbank:gi:109522090;genbank:Gene HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:105819|NCBI_annot:gp3|genbank:acc:YP_655764;genbank:gi:109522087;genbank:Gene HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:105818|NCBI_annot:gp2|genbank:acc:YP_655763;genbank:gi:109522086;genbank:Gene Blast (e-value=0)
MTP 11 lcl|Aclame:protein:vir:105827|NCBI_annot:gp11|genbank:acc:YP_655772;genbank:gi:109522095;genbank:Gen Blast (e-value=1e-160)
Sheath NOT FOUND
Ad1 7 lcl|Aclame:protein:vir:105823|NCBI_annot:gp7|genbank:acc:YP_655768;genbank:gi:109522091;genbank:Gene HHsearch (proba=100.00%)
Hc1 8 lcl|Aclame:protein:vir:105824|NCBI_annot:gp8|genbank:acc:YP_655769;genbank:gi:109522092;genbank:Gene HHsearch (proba=100.00%)
Ne1 9 lcl|Aclame:protein:vir:105825|NCBI_annot:gp9|genbank:acc:YP_655770;genbank:gi:109522093;genbank:Gene HHsearch (proba=100.00%)
Tc1 10 lcl|Aclame:protein:vir:105826|NCBI_annot:gp10|genbank:acc:YP_655771;genbank:gi:109522094;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:102605
protein:vir:105822
protein:vir:7990
Llij
PMC
Che8
100 %
100 %
99 %
Portal protein:vir:102602
protein:vir:105819
protein:vir:7987
Llij
PMC
Che8
100 %
100 %
99 %
TermL protein:vir:7986
protein:vir:102601
protein:vir:105818
Che8
Llij
PMC
99 %
98 %
98 %
MTP protein:vir:102610
protein:vir:105827
protein:vir:7995
Llij
PMC
Che8
100 %
100 %
100 %
Ad1 protein:vir:102606
protein:vir:105823
protein:vir:7991
Llij
PMC
Che8
100 %
100 %
99 %
Hc1 protein:vir:102607
protein:vir:105824
protein:vir:7992
Llij
PMC
Che8
100 %
100 %
97 %
Ne1 protein:vir:102608
protein:vir:105825
protein:vir:7993
Llij
PMC
Che8
100 %
100 %
98 %
Tc1 protein:vir:102609
protein:vir:105826
protein:vir:7994
Llij
PMC
Che8
100 %
100 %
99 %