Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 14 lcl|Aclame:protein:vir:2344|NCBI_annot:gp14|genbank:acc:NP_075281;genbank:gi:12657868;genbank:GeneID HHsearch (proba=100.00%)
Portal 11 lcl|Aclame:protein:vir:2341|NCBI_annot:gp11|genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID HHsearch (proba=100.00%)
TermL 10 lcl|Aclame:protein:vir:2340|NCBI_annot:gp10|genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 15 lcl|Aclame:protein:vir:2345|NCBI_annot:gp15|genbank:acc:NP_075282;genbank:gi:12657869;genbank:GeneID HHsearch (proba=100.00%)
Hc1 16 lcl|Aclame:protein:vir:2346|NCBI_annot:gp16|genbank:acc:NP_075283;genbank:gi:12657870;genbank:GeneID HHsearch (proba=100.00%)
Ne1 17 lcl|Aclame:protein:vir:2347|NCBI_annot:gp17|genbank:acc:NP_075284;genbank:gi:12657871;genbank:GeneID HHsearch (proba=100.00%)
Tc1 18 lcl|Aclame:protein:vir:2348|NCBI_annot:gp18|genbank:acc:NP_075285;genbank:gi:12657872;genbank:GeneID HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:2344
protein:vir:2430
protein:vir:104085
Bxb1
D29
Che12
100 %
70 %
70 %
Portal protein:vir:2341
protein:vir:7768
protein:vir:104082
Bxb1
Bxz2
Che12
100 %
66 %
62 %
TermL protein:vir:2340
protein:vir:78494
protein:vir:78228
Bxb1
U2
Bethlehem
100 %
83 %
80 %
Ad1 protein:vir:2345
protein:vir:7773
protein:vir:4228
Bxb1
Bxz2
L5
100 %
57 %
56 %
Hc1 protein:vir:2346
protein:vir:78529
protein:vir:78288
Bxb1
U2
Bethlehem
100 %
90 %
89 %
Ne1 protein:vir:78503
protein:vir:78298
protein:vir:2347
U2
Bethlehem
Bxb1
100 %
100 %
100 %
Tc1 protein:vir:2348
protein:vir:78481
protein:vir:78292
Bxb1
U2
Bethlehem
100 %
99 %
99 %