Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 68 lcl|NC_019405.1_cdsid_YP_006987964.1 HHsearch (proba=100.00%)
Portal 42 lcl|NC_019405.1_cdsid_YP_006987938.1 HHsearch (proba=100.00%)
TermL 318 lcl|NC_019405.1_cdsid_YP_006988214.1 Blast (e-value=3e-32)
MTP 92 lcl|NC_019405.1_cdsid_YP_006987988.1 Blast (e-value=7e-07)
Sheath NOT FOUND
Ad1 87 lcl|NC_019405.1_cdsid_YP_006987983.1 HHsearch (proba=100.00%)
Hc1 88 lcl|NC_019405.1_cdsid_YP_006987984.1 HHsearch (proba=98.37%)
Ne1 89 lcl|NC_019405.1_cdsid_YP_006987985.1 HHsearch (proba=98.10%)
Tc1 91 lcl|NC_019405.1_cdsid_YP_006987987.1 HHsearch (proba=97.91%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:97255
protein:vir:94933
protein:vir:80376
M6
Xp15
phi644-2
28 %
23 %
19 %
Portal protein:vir:94956
protein:vir:80453
protein:vir:95014
Xp15
BcepGomr
KS7
28 %
26 %
24 %
TermL protein:vir:103223
protein:vir:5248
protein:vir:80106
JK06
Aaphi23
B054
27 %
26 %
23 %
MTP protein:vir:78378
protein:vir:80398
protein:vir:97240
SETP3
BcepGomr
M6
23 %
18 %
18 %
Ad1 protein:vir:80389
protein:vir:95176
protein:vir:94955
BcepGomr
PA73
Xp15
31 %
27 %
23 %
Hc1 protein:vir:97237
protein:vir:80382
protein:vir:104346
M6
BcepGomr
RTP
16 %
17 %
14 %
Ne1 protein:vir:96774
protein:vir:94994
protein:vir:104347
phiHSIC
KS7
RTP
21 %
23 %
24 %
Tc1 protein:vir:94921
protein:vir:103278
protein:vir:95155
Xp15
JK06
PA73
19 %
22 %
20 %