Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Ac42 | Genbank acc : NC_014660

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 255

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	184	lcl\|NC_014660.1_cdsid_YP_004009546.1	HHsearch (proba=100.00%)
Portal	179	lcl\|NC_014660.1_cdsid_YP_004009541.1	HHsearch (proba=100.00%)
TermL	176	lcl\|NC_014660.1_cdsid_YP_004009538.1	Blast (e-value=0)
MTP	178	lcl\|NC_014660.1_cdsid_YP_004009540.1	Blast (e-value=6e-76)
Sheath	177	lcl\|NC_014660.1_cdsid_YP_004009539.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	172	lcl\|NC_014660.1_cdsid_YP_004009534.1	HHsearch (proba=100.00%)
Hc2	173	lcl\|NC_014660.1_cdsid_YP_004009535.1	HHsearch (proba=100.00%)
Tc2	174	lcl\|NC_014660.1_cdsid_YP_004009536.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:7214 protein:vir:107947 protein:vir:103463	T4 JS98 RB32	78 % 78 % 77 %
Portal	protein:vir:103458 protein:vir:7208 protein:vir:6896	RB32 T4 RB69	63 % 63 % 63 %
TermL	protein:vir:7202 protein:vir:108053 protein:vir:103455	T4 JS98 RB32	70 % 69 % 69 %
MTP	protein:vir:108048 protein:vir:6895 protein:vir:7207	JS98 RB69 T4	75 % 67 % 65 %
Sheath	protein:vir:108052 protein:vir:6894 protein:vir:103456	JS98 RB69 RB32	70 % 68 % 67 %
Ad2	protein:vir:103451 protein:vir:7198 protein:vir:107900	RB32 T4 JS98	66 % 66 % 63 %
Hc2	protein:vir:103452 protein:vir:6890 protein:vir:7199	RB32 RB69 T4	70 % 70 % 69 %
Tc2	protein:vir:103453 protein:vir:7200 protein:vir:6891	RB32 T4 RB69	53 % 53 % 50 %