Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 9 lcl|NC_013600.1_cdsid_YP_003344944.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_013600.1_cdsid_YP_003344938.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_013600.1_cdsid_YP_003344937.1 Blast (e-value=2e-86)
MTP 14 lcl|NC_013600.1_cdsid_YP_003344949.1 Blast (e-value=5e-29)
Sheath NOT FOUND
Ad1 10 lcl|NC_013600.1_cdsid_YP_003344945.1 HHsearch (proba=100.00%)
Hc1 11 lcl|NC_013600.1_cdsid_YP_003344946.1 HHsearch (proba=100.00%)
Ne1 12 lcl|NC_013600.1_cdsid_YP_003344947.1 HHsearch (proba=100.00%)
Tc1 13 lcl|NC_013600.1_cdsid_YP_003344948.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95131
protein:vir:96792
protein:vir:1239
PA73
phiHSIC
phi ETA
26 %
21 %
15 %
Portal protein:vir:95149
protein:vir:80453
protein:vir:78393
PA73
BcepGomr
SETP3
30 %
27 %
27 %
TermL protein:vir:94991
protein:vir:78394
protein:vir:94525
KS7
SETP3
phiJL-1
40 %
39 %
18 %
MTP protein:vir:107670
protein:vir:104349
protein:vir:103277
T1
RTP
JK06
31 %
31 %
27 %
Ad1 protein:vir:78383
protein:vir:95004
protein:vir:80389
SETP3
KS7
BcepGomr
26 %
26 %
25 %
Hc1 protein:vir:104346
protein:vir:97237
protein:vir:79639
RTP
M6
TLS
31 %
26 %
26 %
Ne1 protein:vir:78380
protein:vir:94994
protein:vir:79638
SETP3
KS7
TLS
40 %
38 %
35 %
Tc1 protein:vir:79637
protein:vir:104348
protein:vir:107704
TLS
RTP
T1
23 %
21 %
19 %