Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 19 lcl|NC_011551.1_cdsid_YP_002308532.1 HHsearch (proba=100.00%)
Portal 17 lcl|NC_011551.1_cdsid_YP_002308530.1 HHsearch (proba=100.00%)
TermL 16 lcl|NC_011551.1_cdsid_YP_002308529.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 20 lcl|NC_011551.1_cdsid_YP_002308533.1 HHsearch (proba=100.00%)
Hc3 21 lcl|NC_011551.1_cdsid_YP_002308534.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3525
protein:vir:105522
protein:vir:105374
APSE-1
phiSG1
Sf6
98 %
82 %
80 %
Portal protein:vir:3520
protein:vir:105429
protein:vir:172
APSE-1
Sf6
HK620
99 %
71 %
71 %
TermL protein:vir:3519
protein:vir:105417
protein:vir:171
APSE-1
Sf6
HK620
98 %
39 %
39 %
Ad3 protein:vir:3528
protein:vir:105380
protein:vir:176
APSE-1
Sf6
HK620
99 %
59 %
59 %
Hc3 protein:vir:3529
protein:vir:105525
protein:vir:9268
APSE-1
phiSG1
ST64T
95 %
61 %
61 %