Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 14 lcl|Aclame:protein:vir:102429|NCBI_annot:gp14|genbank:acc:YP_655291;genbank:gi:109521854;genbank:Gen HHsearch (proba=99.84%)
Portal 11 lcl|Aclame:protein:vir:102426|NCBI_annot:gp11|genbank:acc:YP_655288;genbank:gi:109521851;genbank:Gen HHsearch (proba=100.00%)
TermL 6 lcl|Aclame:protein:vir:102402|NCBI_annot:gp6|genbank:acc:YP_655283;genbank:gi:109521846;genbank:Gene Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 23 lcl|Aclame:protein:vir:102438|NCBI_annot:gp23|genbank:acc:YP_655300;genbank:gi:109521863;genbank:Gen HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 26 lcl|Aclame:protein:vir:102441|NCBI_annot:gp26|genbank:acc:YP_655303;genbank:gi:109521866;genbank:Gen HHsearch (proba=100.00%)
Tc1 24 lcl|Aclame:protein:vir:102439|NCBI_annot:gp24|genbank:acc:YP_655301;genbank:gi:109521864;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:2349
protein:vir:78506
protein:vir:78275
Bxb1
U2
Bethlehem
26 %
25 %
24 %
Portal protein:vir:102426
protein:vir:99088
protein:vir:8654
Pipefish
Qyrzula
Rosebush
100 %
56 %
56 %
TermL protein:vir:102402
protein:vir:99083
protein:vir:8649
Pipefish
Qyrzula
Rosebush
100 %
59 %
59 %
Ad1 protein:vir:102438
protein:vir:99098
protein:vir:8666
Pipefish
Qyrzula
Rosebush
100 %
46 %
46 %
Ne1 protein:vir:102441
protein:vir:99101
protein:vir:8669
Pipefish
Qyrzula
Rosebush
100 %
54 %
54 %
Tc1 protein:vir:102439
protein:vir:99099
protein:vir:8667
Pipefish
Qyrzula
Rosebush
100 %
48 %
48 %