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userguide:contextdefinition [2009/12/16 14:34] 132.168.74.230 |
userguide:contextdefinition [2010/01/05 12:11] (current) 132.168.74.230 |
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There are two types of contexts in hEIDI: | There are two types of contexts in hEIDI: | ||
* Search context: each identification result from Mascot, or from any other identification engine, is automatically "encapsulated" into one Search context. | * Search context: each identification result from Mascot, or from any other identification engine, is automatically "encapsulated" into one Search context. | ||
- | * User context: it is created by the user in order to gather together several identification results into a User context. In order to have non-redundant sets of proteins for a given context, protein grouping process need to be run. | + | * User context: it is created by the user in order to gather together several identification results into a User context. In order to have non-redundant sets of proteins for a given context, proteins need to be grouped to build "Protein Groups". |
- | + | ||
- | ===== GUI: context tree view ===== | + | |
+ | ===== Context tree view ===== | ||
+ | ==== User Context ==== | ||
{{:usercontextshierarchy.png |}} | {{:usercontextshierarchy.png |}} | ||
A User context is represented by {{:usercontext.png|}}.\\ | A User context is represented by {{:usercontext.png|}}.\\ | ||
- | A context have either child contexts or identifications but can't have both.\\ | + | A User context contains either child contexts or identifications but can't have both at the same level.\\ |
- | There are different reasons for grouping several identifications under a same context:\\ | + | |
- | – Same biological origine | + | There are multiple reasons for grouping several identifcations under the same User context: |
- | - Same gel | + | * Same biological origin |
- | – Same culture condition | + | * Same gel |
- | – Same chromatographic column | + | * Same culture condition |
- | - ... | + | * Same chromatographic column |
+ | * ... | ||
==== Search Context ==== | ==== Search Context ==== | ||
- | {{:context.png|}} | + | {{:searchcontextshierarchy.png |}} |
- | {{:searchcontextshierarchy.png|}} | + | Search context is represented by {{:context.png|}}. |