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--- how_to:exportadhocexport_ppmswleaves [2011/12/05 16:35]
132.168.73.124 créée
+++ how_to:exportadhocexport_ppmswleaves [2011/12/05 18:00] (current)
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 ====== How-to export Protein Groups, their peptides and their leaves ======
+See also [[how_to:exportadhocexport|]]
+===== Run the Export Data feature =====
+{{ :how_to:export_adhoc_menu.png|}}
+  - From the MSIExplorer view, select the UserContext node to export data from
+  - Select ''MS Identifications->Context->Export->Data'' from the main menu bar, to display the ''Export Data'' dialog
+  - Select ''Export protein groups with peptides & leaves'' from the top droplist
+  - Change default settings if needeed
+  - Click the ''OK'' button
+  - Select the .csv file to export to
 {{:how_to:export_adhoc_pg_ms_leaves.png|}}
+===== Details about resulting .csv file =====
+See below for an example of export. Colours have been added for explanations.
+  * In red, the protein group (ID, sequence, length, mass, PI, score, coverage, #peptides)
+  * In orange, the "direct" peptide(s) in the protein group (ID, sequence, calc mass, exp mass, score, start, stop, elution, #leaves)
+  * In yellow, the experimental peptides (i.e. the "leaves"), for each "direct" peptide (ID, sequence, context name, query, search title, sample name)
+{{:how_to:export_adhoc_pg_ms_leaves_result.png|}}

hEIDI