how_to:accessspectralcountdata
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how_to:accessspectralcountdata [2010/01/04 16:53] 132.168.74.230 |
how_to:accessspectralcountdata [2012/02/29 12:26] (current) 132.168.73.124 |
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| - | ====== Access spectral count data ====== | + | ====== How to run and access spectral count data ====== |
| - | First, run the Spectral Count algorithm: | + | :!: Since hEIDI 1.13.0, spectral count has been tuned. To achieve this, the new field ''leaves_match_count'' in MSIdb has been created in the ''peptide_instance'' table. For this reason, an MSIdb migration has to be realized to add & populate this field if you intend to use the hEIDI 1.13.0 version. |
| - | - Select the context of your choice (for which protein grouping have been executed) | + | |
| + | ===== Run the Spectral Count algorithm ===== | ||
| + | |||
| + | Spectral Count algorithm should have been run at least once : | ||
| + | - Select one or more context of your choice (for which protein grouping have been executed) | ||
| - Right-click and select ''Algorithms > Compute Spectral Count'' | - Right-click and select ''Algorithms > Compute Spectral Count'' | ||
| - | - Check/Uncheck optional parameters to compute. Then ''Ok''. | + | - Check/Uncheck optional parameters to compute. Then ''OK''. |
| {{:spectralcountparam.png|Settings spectral count algorithm}} | {{:spectralcountparam.png|Settings spectral count algorithm}} | ||
| - | When Spectral Count algorithm execution is finished, you can retreive results in: | + | ===== View spectral count data ===== |
| + | When Spectral Count algorithm execution is finished, you can retrieve results and parameters used in: | ||
| * [[accessproperties|properties]] of every Protein Groups in that context | * [[accessproperties|properties]] of every Protein Groups in that context | ||
| - | * the [[ContextExplorer]] window | + | {{:spectralcountresultpropertysheet.png| Protein Group properties}} |
| + | * the [[browseContextProtGroups|context's protein groups]] list | ||
| {{:spectralcountresultoutlineview.png| ContextExplorer window showing Spectral Count results}} | {{:spectralcountresultoutlineview.png| ContextExplorer window showing Spectral Count results}} | ||
| - | {{spectralcountresultpropertysheet.png| Protein Group properties}} | + | |
how_to/accessspectralcountdata.1262620411.txt.gz · Last modified: 2010/01/04 16:53 by 132.168.74.230
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