compareprotocols
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compareprotocols [2010/01/08 10:23] 132.168.73.247 |
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| ===== Execute protein grouping for every contexts ===== | ===== Execute protein grouping for every contexts ===== | ||
| {{:usecase1_groupedcontexthierarchy.png |}} | {{:usecase1_groupedcontexthierarchy.png |}} | ||
| - | A context compile a number of identifications results. A same protein may be present in several identifications. So, the first step is to suppress this redundancy by [[userguide:peptidesandproteingrouping|grouping proteins]] at the context level. [[how_to:proteingrouping|Execute the protein grouping algorithm]] for all the User contexts in this order:\\ | + | Contexts representing preparation protocol compile a number of identifications results. A same protein may be present in several identifications. So, the first step is to suppress this redundancy by [[userguide:peptidesandproteingrouping|grouping proteins]] at the context level. [[how_to:proteingrouping|Execute the protein grouping algorithm]] for all the User contexts in this order:\\ |
| * Start with the contexts that directly group the identification results: "Ultrafiltration", "Proteominer" and "TCA Precipitation". Do that for the two replicates. | * Start with the contexts that directly group the identification results: "Ultrafiltration", "Proteominer" and "TCA Precipitation". Do that for the two replicates. | ||
| * Then continue with the contexts "Replicate1" and "Replicate2". | * Then continue with the contexts "Replicate1" and "Replicate2". | ||
| * And finally, end with the root context named "ProjectABC" | * And finally, end with the root context named "ProjectABC" | ||
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| If everything has worked correctly, all the context names are now in red. | If everything has worked correctly, all the context names are now in red. | ||
compareprotocols.1262942638.txt.gz ยท Last modified: 2010/01/08 10:23 by 132.168.73.247
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