userguide:proteingroups
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userguide:proteingroups [2012/02/28 15:14] 132.168.73.124 |
userguide:proteingroups [2012/02/28 16:22] (current) 132.168.73.124 |
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| ====== Protein Groups and peptides ====== | ====== Protein Groups and peptides ====== | ||
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| + | See also [[how_to:browsecontextprotgroups|how-to access the protein group view]] and/or [[how_to:peptideview|how-to access peptide views]]. | ||
| ===== Definition ===== | ===== Definition ===== | ||
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| * # Leaves: number of spectra | * # Leaves: number of spectra | ||
| * Context: context name | * Context: context name | ||
| - | * Child contexts: for each peptide node, small coloured squares correspond to the context(s) to which belong to the child peptides. The colour chnage according the depth of the context. When positioning the mouse cursor onto this image, the context names are displayed as a tooltip. The context of the last child peptide is not represented (a context is actually an identification result in this case). | + | * Child contexts: for each peptide node, small coloured squares correspond to the context(s) to which belong to the child peptides. The colour changes according the depth of the context. When positioning the mouse cursor onto this image, the context names are displayed as a tooltip. The context of the last child peptide is not represented (a context is actually an identification result in this case). |
| * # Dist Idf: number of distinct identifications from which child peptides belong to | * # Dist Idf: number of distinct identifications from which child peptides belong to | ||
| - | * Protein Group matche(s): number of protein match | + | * Protein Group matche(s): number of protein match(es) and concerned typical protein(s) |
| - | * Charge: | + | * Charge: charge of the best child |
| - | * Score: | + | * Score: score of the best child |
| - | * Calc. mass: | + | * Calc. mass: calculated mass |
| - | * Exp. mass: | + | * Exp. mass: experimental mass of the best child |
| - | * R.T.: | + | * R.T.: retention time of the best child |
| - | * P.T.M.: | + | * P.T.M.: post-traductional modifications |
| {{:userguide:childctxt4species2.png|}} | {{:userguide:childctxt4species2.png|}} | ||
userguide/proteingroups.1330438476.txt.gz · Last modified: 2012/02/28 15:14 by 132.168.73.124
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