userguide:proteingroups
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userguide:proteingroups [2012/02/28 13:35] 132.168.73.124 |
userguide:proteingroups [2012/02/28 16:22] (current) 132.168.73.124 |
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| ====== Protein Groups and peptides ====== | ====== Protein Groups and peptides ====== | ||
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| + | See also [[how_to:browsecontextprotgroups|how-to access the protein group view]] and/or [[how_to:peptideview|how-to access peptide views]]. | ||
| ===== Definition ===== | ===== Definition ===== | ||
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| If you select another protein from the sameset/subset tabs, the table showing peptides will be updated accordingly. Only peptide matching the selected protein will be displayed. | If you select another protein from the sameset/subset tabs, the table showing peptides will be updated accordingly. Only peptide matching the selected protein will be displayed. | ||
| - | ===== Peptides details ===== | + | ===== More details about peptides view ===== |
| - | Peptides information are visible in the protein group views (context's protein group list or protein group details, see above) but also in the list of all [[how_to:peptideview|peptides of a context]]. | + | Peptide information is visible in the protein group view (context's protein group list or protein group details, see above) but also in the list of all [[how_to:peptideview|peptides of a context]]. |
| - | **Details about the "Child contexts" column in the treeview:** | + | A '+' appears in front of each peptide node. If you deploy it, you will explore the child peptide, i.e. the peptides that belong to the contexts below |
| - | Peptides and their childs (= new peptides obtained when protein grouping is executed on a given context) are displayed in the treeview.\\ | + | * # Child: number of direct child peptides, i.e. the number of peptides in the context(s) directly below |
| - | For each "parent" peptide node, the image in the "Child contexts" column displays, as small coloured squares, the context(s) of the child peptide(s).\\ | + | * # Leaves: number of spectra |
| - | A different colour is used according the depth of the context.\\ | + | * Context: context name |
| - | When positioning the mouse cursor onto the image, the context names are displayed as a tooltip.\\ | + | * Child contexts: for each peptide node, small coloured squares correspond to the context(s) to which belong to the child peptides. The colour changes according the depth of the context. When positioning the mouse cursor onto this image, the context names are displayed as a tooltip. The context of the last child peptide is not represented (a context is actually an identification result in this case). |
| - | The context of the last child peptide is not represented (a context is actually an identification result in this case). | + | * # Dist Idf: number of distinct identifications from which child peptides belong to |
| + | * Protein Group matche(s): number of protein match(es) and concerned typical protein(s) | ||
| + | * Charge: charge of the best child | ||
| + | * Score: score of the best child | ||
| + | * Calc. mass: calculated mass | ||
| + | * Exp. mass: experimental mass of the best child | ||
| + | * R.T.: retention time of the best child | ||
| + | * P.T.M.: post-traductional modifications | ||
| {{:userguide:childctxt4species2.png|}} | {{:userguide:childctxt4species2.png|}} | ||
userguide/proteingroups.1330432551.txt.gz · Last modified: 2012/02/28 13:35 by 132.168.73.124
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