userguide:pride_inspector
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userguide:pride_inspector [2012/03/14 12:03] 132.168.73.124 |
userguide:pride_inspector [2012/03/14 12:06] (current) 132.168.73.124 |
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| {{:userguide:pride_peptidecountinprideinspectorandheidi.png|}} | {{:userguide:pride_peptidecountinprideinspectorandheidi.png|}} | ||
| - | Peptide unicity in an hEIDI context is based on sequence & calculated mass.\\ | + | **Peptide unicity in an hEIDI context is based on sequence & calculated mass.**\\ |
| For example, the peptide ''FASFIDKVR'' is represented by one peptide node in the ''Peptide View''. \\ | For example, the peptide ''FASFIDKVR'' is represented by one peptide node in the ''Peptide View''. \\ | ||
| This peptide matches on 15 master proteins (see the ''Protein Group(s) match(es)'' column) but 7 other proteins as well (information not visible in hEIDI)\\ | This peptide matches on 15 master proteins (see the ''Protein Group(s) match(es)'' column) but 7 other proteins as well (information not visible in hEIDI)\\ | ||
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| {{:userguide:pride_onepeptideinheidi.png|}} | {{:userguide:pride_onepeptideinheidi.png|}} | ||
| - | In Pride Inspector, a row exists for each peptide-protein match.\\ | + | **In Pride Inspector, a row exists for each peptide-protein match.**\\ |
| For example, the peptide ''FASFIDKVR'' appears 22 times: one row for each protein match. | For example, the peptide ''FASFIDKVR'' appears 22 times: one row for each protein match. | ||
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| So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context. | So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context. | ||
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| + | ===== The Experiment Details tab ===== | ||
| {{:userguide:prideinspector_2.png|}} | {{:userguide:prideinspector_2.png|}} | ||
userguide/pride_inspector.1331723007.txt.gz · Last modified: 2012/03/14 12:03 by 132.168.73.124
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