how_to:accessspectralcountdata
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how_to:accessspectralcountdata [2010/01/12 07:55] 132.168.73.247 |
how_to:accessspectralcountdata [2012/02/29 12:26] (current) 132.168.73.124 |
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| ====== How to run and access spectral count data ====== | ====== How to run and access spectral count data ====== | ||
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| + | :!: Since hEIDI 1.13.0, spectral count has been tuned. To achieve this, the new field ''leaves_match_count'' in MSIdb has been created in the ''peptide_instance'' table. For this reason, an MSIdb migration has to be realized to add & populate this field if you intend to use the hEIDI 1.13.0 version. | ||
| ===== Run the Spectral Count algorithm ===== | ===== Run the Spectral Count algorithm ===== | ||
| Spectral Count algorithm should have been run at least once : | Spectral Count algorithm should have been run at least once : | ||
| - | - Select the context of your choice (for which protein grouping have been executed) | + | - Select one or more context of your choice (for which protein grouping have been executed) |
| - Right-click and select ''Algorithms > Compute Spectral Count'' | - Right-click and select ''Algorithms > Compute Spectral Count'' | ||
| - Check/Uncheck optional parameters to compute. Then ''OK''. | - Check/Uncheck optional parameters to compute. Then ''OK''. | ||
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| ===== View spectral count data ===== | ===== View spectral count data ===== | ||
| - | When Spectral Count algorithm execution is finished, you can retrieve results in: | + | When Spectral Count algorithm execution is finished, you can retrieve results and parameters used in: |
| * [[accessproperties|properties]] of every Protein Groups in that context | * [[accessproperties|properties]] of every Protein Groups in that context | ||
| {{:spectralcountresultpropertysheet.png| Protein Group properties}} | {{:spectralcountresultpropertysheet.png| Protein Group properties}} | ||
how_to/accessspectralcountdata.1263279314.txt.gz · Last modified: 2010/01/12 07:55 by 132.168.73.247
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