compareprotocols
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compareprotocols [2010/01/06 18:00] 132.168.74.230 |
compareprotocols [2010/01/08 10:55] (current) 132.168.73.247 |
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| ===== Check the filter parameters used in identification results ===== | ===== Check the filter parameters used in identification results ===== | ||
| - | [[how_to:idffilters|How to check filter parameters used in identification results]]\\ | + | A set of properties are accessible for each identification and can be [[how_to:accessproperties|displayed or used to filter the list]]. |
| - | [[how_to:accessproperties|how to filter columns in a tree view]] | + | This is specifically useful to [[how_to:idffilters|check that same filter parameters]] were used for all identification results validation.\\ |
| ===== Structure your experiment as a context tree ===== | ===== Structure your experiment as a context tree ===== | ||
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| ===== Execute protein grouping for every contexts ===== | ===== Execute protein grouping for every contexts ===== | ||
| {{:usecase1_groupedcontexthierarchy.png |}} | {{:usecase1_groupedcontexthierarchy.png |}} | ||
| - | A context compile a number of identifications results. A same protein may be present in several identifications. So, the first step is to suppress this redundancy by [[userguide:peptidesandproteingrouping|grouping proteins]] at the context level. [[how_to:proteingrouping|Execute the protein grouping algorithm]] for all the User contexts in this order:\\ | + | Contexts representing preparation protocol compile a number of identifications results. A same protein may be present in several identifications. So, the first step is to suppress this redundancy by [[userguide:peptidesandproteingrouping|grouping proteins]] at the context level. [[how_to:proteingrouping|Execute the protein grouping algorithm]] for all the User contexts in this order:\\ |
| * Start with the contexts that directly group the identification results: "Ultrafiltration", "Proteominer" and "TCA Precipitation". Do that for the two replicates. | * Start with the contexts that directly group the identification results: "Ultrafiltration", "Proteominer" and "TCA Precipitation". Do that for the two replicates. | ||
| * Then continue with the contexts "Replicate1" and "Replicate2". | * Then continue with the contexts "Replicate1" and "Replicate2". | ||
| * And finally, end with the root context named "ProjectABC" | * And finally, end with the root context named "ProjectABC" | ||
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| If everything has worked correctly, all the context names are now in red. | If everything has worked correctly, all the context names are now in red. | ||
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| ===== Save the context hierarchy ===== | ===== Save the context hierarchy ===== | ||
| - | | + | [[how_to:savetomsidb|Save back to the MSIdb]].\\ |
compareprotocols.1262797224.txt.gz · Last modified: 2010/01/06 18:00 by 132.168.74.230
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