Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 68 lcl|NC_021331.1_cdsid_YP_008059790.1 HHsearch (proba=100.00%)
Portal 62 lcl|NC_021331.1_cdsid_YP_008059784.1 HHsearch (proba=100.00%)
TermL 61 lcl|NC_021331.1_cdsid_YP_008059783.1 Blast (e-value=0)
MTP 74 lcl|NC_021331.1_cdsid_YP_008059796.1 Blast (e-value=1e-105)
Sheath NOT FOUND
Ad1 70 lcl|NC_021331.1_cdsid_YP_008059792.1 HHsearch (proba=100.00%)
Hc1 71 lcl|NC_021331.1_cdsid_YP_008059793.1 HHsearch (proba=100.00%)
Ne1 72 lcl|NC_021331.1_cdsid_YP_008059794.1 HHsearch (proba=100.00%)
Tc1 73 lcl|NC_021331.1_cdsid_YP_008059795.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79642
protein:vir:107687
protein:vir:103285
TLS
T1
JK06
79 %
76 %
51 %
Portal protein:vir:79647
protein:vir:107662
protein:vir:104338
TLS
T1
RTP
69 %
55 %
54 %
TermL protein:vir:107694
protein:vir:79648
protein:vir:104336
T1
TLS
RTP
65 %
62 %
50 %
MTP protein:vir:79636
protein:vir:107670
protein:vir:104349
TLS
T1
RTP
79 %
70 %
53 %
Ad1 protein:vir:79640
protein:vir:107702
protein:vir:104344
TLS
T1
RTP
71 %
49 %
45 %
Hc1 protein:vir:79639
protein:vir:104346
protein:vir:107669
TLS
RTP
T1
74 %
54 %
46 %
Ne1 protein:vir:79638
protein:vir:107703
protein:vir:103280
TLS
T1
JK06
71 %
60 %
46 %
Tc1 protein:vir:79637
protein:vir:107704
protein:vir:103278
TLS
T1
JK06
65 %
59 %
53 %