Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 135 lcl|NC_021073.1_cdsid_YP_007878108.1 HHsearch (proba=100.00%)
Portal 137 lcl|NC_021073.1_cdsid_YP_007878110.1 HHsearch (proba=100.00%)
TermL 138 lcl|NC_021073.1_cdsid_YP_007878111.1 Blast (e-value=1e-66)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 133 lcl|NC_021073.1_cdsid_YP_007878106.1 HHsearch (proba=100.00%)
Hc1 132 lcl|NC_021073.1_cdsid_YP_007878105.1 HHsearch (proba=100.00%)
Ne1 129 lcl|NC_021073.1_cdsid_YP_007878102.1 HHsearch (proba=100.00%)
Tc1 131 lcl|NC_021073.1_cdsid_YP_007878104.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Hc1 3 2
Ne1<->Ad1 4 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:485
protein:vir:100247
protein:vir:4456
P27
Bcep176
ST64B
22 %
21 %
21 %
Portal protein:vir:4454
protein:vir:483
protein:vir:100150
ST64B
P27
phi1026b
31 %
30 %
28 %
TermL protein:vir:81178
protein:vir:4508
protein:vir:102079
Geobacillus virus E2
V
Fah
28 %
27 %
27 %
Ad1 protein:vir:100245
protein:vir:97069
protein:vir:10365
Bcep176
OP1
Xp10
35 %
23 %
23 %
Hc1 protein:vir:80342
protein:vir:1436
protein:vir:81177
phi644-2
phiE125
Geobacillus virus E2
25 %
25 %
24 %
Ne1 protein:vir:105089
protein:vir:5745
protein:vir:4347
phiKO2
PY54
D3
26 %
25 %
23 %
Tc1 protein:vir:5744
protein:vir:105055
protein:vir:93602
PY54
phiKO2
phi 4795
19 %
17 %
19 %