Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 87 lcl|NC_020875.1_cdsid_YP_007677276.1 HHsearch (proba=100.00%)
Portal 83 lcl|NC_020875.1_cdsid_YP_007677272.1 HHsearch (proba=100.00%)
TermL 80 lcl|NC_020875.1_cdsid_YP_007677269.1 Blast (e-value=0)
MTP 82 lcl|NC_020875.1_cdsid_YP_007677271.1 Blast (e-value=5e-79)
Sheath 81 lcl|NC_020875.1_cdsid_YP_007677270.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 68 lcl|NC_020875.1_cdsid_YP_007677257.1 HHsearch (proba=100.00%)
Hc2 69 lcl|NC_020875.1_cdsid_YP_007677258.1 HHsearch (proba=100.00%)
Tc2 70 lcl|NC_020875.1_cdsid_YP_007677259.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103181
protein:vir:104549
protein:vir:106998
Syn9
P-SSM4
S-PM2
83 %
81 %
67 %
Portal protein:vir:103177
protein:vir:104500
protein:vir:106999
Syn9
P-SSM4
S-PM2
78 %
75 %
56 %
TermL protein:vir:103169
protein:vir:104536
protein:vir:104946
Syn9
P-SSM4
P-SSM2
79 %
77 %
70 %
MTP protein:vir:104504
protein:vir:103176
protein:vir:104771
P-SSM4
Syn9
P-SSM2
67 %
66 %
48 %
Sheath protein:vir:104477
protein:vir:103168
protein:vir:106984
P-SSM4
Syn9
S-PM2
55 %
49 %
40 %
Ad2 protein:vir:103004
protein:vir:104585
protein:vir:104694
Syn9
P-SSM4
P-SSM2
72 %
67 %
37 %
Hc2 protein:vir:103005
protein:vir:104476
protein:vir:106986
Syn9
P-SSM4
S-PM2
74 %
71 %
46 %
Tc2 protein:vir:103006
protein:vir:104479
protein:vir:104695
Syn9
P-SSM4
P-SSM2
73 %
65 %
54 %